مقالات علمی چاپ شده در مجلات

1. "Influence of amphiphilic chitosan-deoxycholic acid-polyacrylic acid copolymer on activity, dynamics, and structure of human lysozyme and pyrazinamidase"
   Somayeh Khanmohammadi, Zahra Lotfi-Sousefi, Shirin Shahabadi, Mohammad Yahyaei, Hossein Naderi-Manesh, Faramarz Mehrnejad
   COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, Vol. 702, 2024
2. "Comparative study of the interactions between C60 fullerene and SARS-CoV-2, HIV, eukaryotic, and bacterial model membranes: Insights into antimicrobial strategies with C60-peptide hybrids"
   Masoud Shahriari, Majid Jafari, Farahnoosh Doustdar , Faramarz Mehrnejad
   International Journal of Biological Macromolecules, Vol. 271, 2024
3. "Chemical Modification of the Amino Groups of Human Insulin: Investigating Structural Properties and Amorphous Aggregation of Acetylated Species"
   Reyhane Kamelnia, Bahram Golyaei, Seyed Peyman Shariatpanahi, Faramarz Mehrnejad, ATIYEH GHASEMI, Ashkan Zare karizak, Azadeh Ebrahim Habibi
   PROTEIN JOURNAL, Vol. 42, No 4, 2023
4. "Recent developments of nanomedicine delivery systems for the treatment of pancreatic cancer"
   Nastaran Rezaei, Masoud Shahriari, Faramarz Mehrnejad
   JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, Vol. 79, No 1, 2022
5. "Insight into molecular mechanism of human insulin encapsulation into the polyacrylic acid/deoxycholic acid-modified chitosan nanogel: An experimental and molecular dynamics investigation"
   Bahareh Tavasoli, Somayeh Khanmohammadi, Mohammad Yahyaei, Mohammad Barshan Tashnizi, Faramarz Mehrnejad
   JOURNAL OF MOLECULAR LIQUIDS, Vol. 369, No 1, 2022
6. "Human serum albumin adsorption on cellulose nanocrystal: A spectroscopy and molecular dynamics simulation research"
   Masoud Shahriari, Faramarz Mehrnejad, Somayeh Khanmohammadi, Yasaman Mahmoodi, Mohammad Reza Youssefian, Mohammad Reza Vakili, Afsaneh Lavasanifar
   APPLIED SURFACE SCIENCE, Vol. 597, No 27, 2022
7. "Atomistic insight into the luminal allosteric regulation of vesicular glutamate transporter 2 by chloride and protons: An all-atom molecular dynamics simulation study"
   Kiana Rostamipour, Reza Talandashti, Faramarz Mehrnejad
   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Vol. -, 2022
8. "A Survey of Gasoline Ameliorator, Methyl-Tert-Butyl Ether (MTBE) on Bovine Serum Albumin: A Spectroscopy and Molecular Dynamic Simulation Study"
   Ebrahim Shahmansoorian, Seyed-Mohammad Atyabi, Parichehreh Yaghmaei, Faramarz Mehrnejad
   Iranian Journal of Biotechnology, Vol. 20, No 3, 2022
9. "The process of L-asparaginase encapsulation by poly (lactic-co-glycolic acid) and methoxy poly (ethylene glycol): A molecular dynamics simulation study"
   Sama Al-Zuwaini, Faramarz Mehrnejad, Zahra Lotfi, Ali Hossein Rezayan, Mohammad Barshan Tashnizi
   Materials Today Communications, Vol. 31, No 31, 2022
10. "Molecular insights into the crystalline nanocellulose and human lysozyme interactions: An experimental and theoretical research"
    Yasaman Mahmoodi, Faramarz Mehrnejad, Somayeh Khanmohammadi, Masoud Shahriari, Fereshteh Rahimi, Mohammad Reza Vakili, Afsaneh Lavasanifar
    International Journal of Biological Macromolecules, Vol. -, 2022
11. "Insights into the Molecular-Level details of betaine interactions with Laccase under various thermal conditions"
    Somayeh Mojtabavi, Majid Jafari, Nasrin Samadi, Faramarz Mehrnejad, MohammadAli Faramarzi
    JOURNAL OF MOLECULAR LIQUIDS, Vol. 339, No 19, 2021
12. "Design and synthesis of polyacrylic acid/deoxycholic acid-modified chitosan copolymer and a close inspection of human growth hormone-copolymer interactions: An experimental and computational study"
    Somayeh Khanmohammadi, Faramarz Mehrnejad, Zahra Lotfi-Sousef, Mohammad Yahyaei, Hossein Naderi-manesh
    COLLOIDS AND SURFACES B-BIOINTERFACES, Vol. 206, No 10, 2021
13. "Molecular modeling prediction of albumin-based nanoparticles and experimental preparation, characterization, and in-vitro release kinetics of prednisolone from the nanoparticles"
    Fatemeh Kaboli, Faramarz Mehrnejad, Ali Nematollahzadeh
    JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, Vol. 64, No 4, 2021
14. "Molecular Insights into Pore Formation Mechanism, Membrane Perturbation, and Water Permeation by the Antimicrobial Peptide Pleurocidin: A Combined All-Atom and Coarse-Grained Molecular Dynamics Simulation Study"
    Reza Talandashti, Faramarz Mehrnejad, Kiana Rostamipour, Farahnoosh Doustdar , Afsaneh Lavasanifar
    JOURNAL OF PHYSICAL CHEMISTRY B, Vol. 125, No 26, pp.7163-7176, 2021
15. "Effect of the lipid composition and cholesterol on the membrane selectivity of low generations PAMAM dendrimers: A molecular dynamics simulation study"
    Majid Jafari, Faramarz Mehrnejad, Reza Talandashti, Farahnoosh Doustdar , MohammadReza Vakili, Afsaneh Lavasanifar
    APPLIED SURFACE SCIENCE, Vol. 540, No 1, 2021
16. "Refinement of coding SNPs in the human aryl hydrocarbon receptor gene using ISNPranker: An integrative-SNP ranking web-tool"
    Younes Aftabi, Saleh Rafei, Habib Zarredar, Amir Amiri-Sadeghan, Zahra Khoshkam, Mohsen Akbari-Shahpar, Ensiyeh Seyedrezazadeh, Faramarz Mehrnejad, Majid Khalili, Sasan Fereidouni, Paige Lawrence
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 90, No 2, 2021
17. "Insight into the Microcosm of the Human Growth Hormone and Its Interactions with Polymers and Copolymers: A Molecular Dynamics Perspective"
    Zahra Lotfi, Faramarz Mehrnejad, Somayeh Khanmohammadi, Fatemeh Kaboli
    LANGMUIR, Vol. 37, No 1, pp.90-104, 2020
18. "Molecular level insight into stability, activity, and structure of Laccase in aqueous ionic liquid and organic solvents: An experimental and computational research"
    Majid Jafari, Somayeh Mojtabavi, Mohammad Ali Faramarzi, Faramarz Mehrnejad, Mohammad Soleimani, Rohollah Mirjani
    JOURNAL OF MOLECULAR LIQUIDS, Vol. 317, No 1, 2020
19. "Structural Studies on an Anti-Angiogenic Peptide Using Molecular Modeling"
    Elham Assarah, Faramarz Mehrnejad, Seyedmohsen Asghari
    Iranian Journal of Biotechnology, Vol. 18, No 4, 2020
20. "Effect of the Met148Leu mutation on the structure and dynamics of the rusticyanin protein from Acidithiobacillus sp. FJ2"
    Roghayeh Jafarpour, Faezeh Fatemi, Akram Eidi, Faramarz Mehrnejad
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 39, No 11, pp.4122-4132, 2020
21. "Molecular Insight into the Interaction between Camptothecin and Acyclic Cucurbit[4]urils as Efficient Nanocontainers in Comparison with Cucurbit[7]uril: Molecular Docking and Molecular Dynamics Simulation"
    Nasim Ahmadian Chashmi, Faramarz Mehrnejad, Mehriar Amininasab
    Journal of Chemical Information and Modeling, Vol. 60, No 3, pp.1791-1803, 2020
22. "Encapsulation of an endostatin peptide in liposomes: Stability, release, and cytotoxicity study"
    Nastaran Rezaei, Faramarz Mehrnejad, Zahra Vaezi, Mosslim Sedghi, Seyedmohsen Asghari, Hossein Naderi-Manesh
    COLLOIDS AND SURFACES B-BIOINTERFACES, Vol. 185, No 1, 2020
23. "Compatibilization of clays and hydrophobic polymers: the case of montmorillonite and polyetheretherketone"
    Kavosh Zandsalimi, Babak Akbari, Faramarz Mehrnejad, Reza Bagheri
    POLYMER BULLETIN, Vol. 1, No 1, 2019
24. "Paclitaxel interaction with cucurbit [7]uril and acyclic Cucurbit[4]uril nanocontainers: A computational approach"
    Nasim Ahmadian, Mehriar Amininasab, Faramarz Mehrnejad
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, Vol. 90, No 7, pp.210-218, 2019
25. "Molecular Basis for Membrane Selectivity of Antimicrobial Peptide Pleurocidin in the Presence of Different Eukaryotic and Prokaryotic Model Membranes"
    Reza Talandashti, Hamid Mahdiuni, Majid Jafari, Faramarz Mehrnejad
    Journal of Chemical Information and Modeling, Vol. 59, No 7, pp.3262-3276, 2019
26. "The role of intermolecular interactions on the encapsulation of human insulin into the chitosan and cholesterol-grafted chitosan polymers"
    Safoura Salar, Majid Jafari, Fatemeh Kaboli, Faramarz Mehrnejad
    CARBOHYDRATE POLYMERS, Vol. 208, No 3, pp.345-355, 2019
27. "A cyclic peptide reproducing the α1 helix of VEGF-B binds to VEGFR-1 and VEGFR-2 and inhibits angiogenesis and tumor growth"
    Elham Assareh, Faramarz Mehrnejad, Kamran Mansouri, Ahmad Reza Esmaeili Rastaghi, Hossein Naderi-Manesh, Seyedmohsen Asghari
    BIOCHEMICAL JOURNAL, Vol. 476, No 4, pp.645-663, 2019
28. "Molecular Self-Assembly Strategy for Encapsulation of an Amphipathic α-Helical Antimicrobial Peptide into the Different Polymeric and Copolymeric Nanoparticles"
    Majid Jafari, Farahnoosh Doustdar, Faramarz Mehrnejad
    Journal of Chemical Information and Modeling, Vol. 59, No 1, pp.550-563, 2018
29. "Computational insights into pH‐dependence of structure and dynamics of pyrazinamidase: A comparison of wild type and mutants"
    Reza Esmaeeli, Faramarz Mehrnejad, Mohammad Mir-derikvand, Niloofar Gopalpoor
    JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 120, No 2, pp.2502-2514, 2018
30. "Molecular insights into the interactions of GF-17 with the gram-negative and gram-positive bacterial lipid bilayers"
    Samira Jahangiri, Majid Jafari, Mehdi Arjomand, Faramarz Mehrnejad
    JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 119, No 11, pp.9205-9216, 2018
31. "Ig-like Domain in Endoglucanase Cel9A from Alicyclobacillus acidocaldarius Makes Dependent the Enzyme Stability on Calcium"
    Mohammad Pazhang, Fereshteh Younesi, Faramarz Mehrnejad, Said Najavand, Alireza Tarinejad, Mehrnaz Haghi, Fatemeh Rashno, Khosro Khajeh
    MOLECULAR BIOTECHNOLOGY, Vol. 60, No 9, pp.698-711, 2018
32. "Effects of Single-Walled Carbon Nanotube on the Conformation of Human Hepcidin: Molecular Dynamics Simulation and Binding Free Energy Calculations"
    Reza Rasoolzadeh, Faramarz Mehrnejad, Majid Taghdir, Parichehr Yaghmaei
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 10, No 10, pp.1-24, 2018
33. "Protein adsorption onto polysaccharides: Comparison of chitosan and chitin polymers"
    Mohammad Yahyaei, Faramarz Mehrnejad, Hossein Naderi-manesh, Ali Hossein Rezayan
    CARBOHYDRATE POLYMERS, Vol. 191, pp.191-197, 2018
34. "The potential impact of carboxylic-functionalized multi-walled carbon nanotubes on trypsin: A Comprehensive spectroscopic and molecular dynamics simulation study"
    Maryam Noordadi, Faramarz Mehrnejad, Reza H. Sajedi, Majid Jafari, Bijan Ranjbar
    PLoS One, Vol. 13, No 6, 2018
35. "The combinatorial effects of osmolytes and alcohols on the stability of pyrazinamidase: Methanol affects the enzyme stability through hydrophobic interactions and hydrogen bonds"
    Mohammad Pazhang, Narjes Mardi, Faramarz Mehrnejad, Nader Chaparzadeh
    International Journal of Biological Macromolecules, Vol. 108, No 3, pp.1339-1347, 2018
36. "The Molecular Basis of the Sodium Dodecyl Sulfate Effect on Human Ubiquitin Structure: A Molecular Dynamics Simulation Study"
    Majid Jafari, Faramarz Mehrnejad, Fereshteh Rahimi, Seyedmohsen Asghari
    Scientific Reports, Vol. 8, No 1, 2018
37. "Insight to the molecular mechanisms of the osmolyte effects on Mycobacterium tuberculosis pyrazinamidase stability using experimental studies, molecular dynamics simulations, and free energy calculation"
    Mohadeseh Khajehzadeh, Saeideh Khaleghnejad, Faramarz Mehrnejad, Mohammad Pazhang, Farahnoosh Doustdar
    International Journal of Mycobacteriology, Vol. 7, No 3, 2018
38. "Insight into the interactions, residue snorkeling, and membrane disordering potency of a single antimicrobial peptide into different lipid bilayers"
    Majid Jafari, Faramarz Mehrnejad, Farahnoosh Doustdar
    PLoS One, Vol. 12, No 11, 2017
39. "Efficient megalin targeted delivery to renal proximal tubular cells mediated by modified-polymyxin B-polyethylenimine based nano-gene-carriers"
    F.. Orujalian, Ali Hossein Rezayan, Faramarz Mehrnejad, Azadeh Hashem Nia, Wayne Thomas Shier, Khalil Abnous, Mohammad Ramezani
    Biomaterials Advances, Vol. 79, No 79, pp.770-782, 2017
40. "Follicle-stimulating hormone encapsulation in the cholesterol-modified chitosan nanoparticles via molecular dynamics simulations and binding free energy calculations"
    Mohammad Yahyaei, Faramarz Mehrnejad, Hossein Naderi-manesh, Ali Hossein Rezayan
    EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, Vol. 107, No 108, pp.126-137, 2017
41. "Aryl hydrocarbon receptor gene transitions (c.-742C>T; c.1661G>A) and idiopathic male infertility: a case-control study with in silico and meta-analysis"
    Younes Aftabi, Abasalt Hosseinzadeh Colagar, Faramarz Mehrnejad, Ensiyeh Seyedrezazadeh, Emad Moudi
    Environmental Science and Pollution Research, Vol. 1, No 1, 2017
42. "Understanding the interactions of human follicle stimulating hormone with single-walled carbon nanotubes by molecular dynamics simulation and free energy analysis"
    Yasaman Mahmoodi, Faramarz Mehrnejad, Khosrow Khalifeh
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, Vol. 46, No 6, pp.1-9, 2017
43. "Chitosan Nanoparticles-Trypsin Interactions: Bio-physicochemical and Molecular Dynamics Simulation Studies"
    Safoura Salar, Faramarz Mehrnejad, Reza H. Sajedi, Javad Mohammadnejad Arough
    International Journal of Biological Macromolecules, Vol. 25, No 103, pp.902-909, 2017
44. "Effects of metal-ion replacement on pyrazinamidase activity: A quantum mechanical study"
    Mahmoud Khadem-maaref, Faramarz Mehrnejad, Arash Phirouznia
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, Vol. 73, No 3, pp.24-29, 2017
45. "Identification of the Crucial Residues in the Early Insertion of Pardaxin into Different Phospholipid Bilayers"
    Majid Jafari, Faramarz Mehrnejad, Raheleh Aghdami, Nader Chaparzadeh, Zahra Razaghi Moghadam Kashani, Farahnoosh Doustdar
    Journal of Chemical Information and Modeling, Vol. 2, No 1, 2017
46. "A computational study of the electronic structure and the chemical activity of curcumin and some novel curcuminoids by density functional theory"
    Masoumeh Ighaei Bonab, Jaber Jahanbin Sardroodi, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    Journal of the Iranian Chemical Society, Vol. 14, No 2, pp.357-364, 2017
47. "The antiangiogenic and antitumor activities of the N-terminal fragment of endostatin augmented by Ile/Arg substitution: The overall structure implicated the biological activity"
    Reyhane Chamani, Mohsen Asghari, Ali Mohammad Alizadeh, Kamran Mansouri, Taher Doroudi, Peir Hossein Kolivand, Hossein Ghafouri, Somayeh Ehteshame, Hanieh Rabouti, Faramarz Mehrnejad
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, Vol. 1864, No 12, pp.1765-1774, 2016
48. "Molecular Insight into Human Lysozyme and Its Ability to Form Amyloid Fibrils in High Concentrations of Sodium Dodecyl Sulfate: A View from Molecular Dynamics Simulations"
    Jafari Majid, Faramarz Mehrnejad
    PLoS One, Vol. 11, No 10, 2016
49. "Antimicrobial Peptides (AMPs)"
    Mehrzad Sadredinamin, Faramarz Mehrnejad, Peyman Hosseini, Farahnoosh Doustdar
    Novelty in Biomedicine, Vol. 4, No 2, pp.70-76, 2016
50. "Synthesis, Radiolabeling, and Biological Evaluation of Peptide LIKKPF Functionalized with HYNIC as Apoptosis Imaging Agent"
    Sepideh Khoshbakht, Davood Beiki, Parham Geramifar, Farzad Kobarfard, Omid Sabzevari, Mohsen Amini, Faramarz Mehrnejad, Soraya Shahhosseini
    Iranian Journal of Pharmaceutical Research, Vol. 15, No 2, pp.415-424, 2016
51. "An in silico approach to investigate the source of the controversial interpretations about the phenotypic results of the human AhR-gene G1661A polymorphism"
    Younes Aftabi, Abasalt Hosseinzadeh Colagar, Faramarz Mehrnejad
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 393, No 21, pp.1-15, 2016
52. "Effect of sorbitol and glycerol on the stability of trypsin and difference between their stabilization effects in the various solvents"
    Mohammad Pazhang, Faramarz Mehrnejad, Yagoob Pazhang, Hanieh Falahati, Nader Chaparzadeh
    BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY, Vol. 63, No 2, pp.206-213, 2016
53. "HYNIC a bifunctional prosthetic group for the labelling of peptides with 99mTc and 18FDG"
    Sepideh Khoshbakht, Farzad Kobarfard, Davood Beiki, Omid Sabzevari, Mohsen Amini, Faramarz Mehrnejad, Kimia Tabib, Soraya Shahhosseini
    JOURNAL OF RADIOANALYTICAL AND NUCLEAR CHEMISTRY, Vol. 307, No 2, pp.1125-1134, 2016
54. "Molecular Interactions in the Systems Composed of Curcumin, Water and Single-Walled Carbon Nanotube: A Molecular Dynamics Simulation Study"
    Masoumeh Ighaei Bonab, Jaber Jahhanbin Sardroodi, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    Journal of Computational and Theoretical Nanoscience, Vol. 12, No 9, pp.2077-2083, 2015
55. "Biochemical Characterization and Computational Identification of Mycobacterium tuberculosis Pyrazinamidase in Some Pyrazinamide-Resistant Isolates of Iran"
    Farahnoosh Doustdar , Mohammad Pazhang, Faramarz Mehrnejad, Mehrnoosh Safarzadeh, Davod Rabiei, Nader Chaparzadeh, Hanieh Falahati, Mohammad Mir-derikvand
    PROTEIN JOURNAL, Vol. 34, No 3, pp.181-192, 2015
56. "Salinity Tolerance Ranking Of Various Wheat Landraces From The West Of The Urmia Saline Lake In Iran By Using Physiological Parameters"
    Nader Chaparzadeh, Younes Aftabi, Meysam Dolati, Faramarz Mehrnejad, Mohammad Pessarakli
    JOURNAL OF PLANT NUTRITION, Vol. 37, No 7, pp.1025-1039, 2014
57. "Study of Orientation and Penetration of LAH4 into Lipid Bilayer Membranes: pH and Composition Dependence"
    Matin Matin Islami, Faramarz Mehrnejad, Farahnoosh Doustdar, Masumeh Alimohammadi Alimohammadi, Mahmoud Khadem, Mohammad Mir-derikvand, Majid Taghdir
    Chemical Biology & Drug Design, Vol. 84, No 2, pp.242-252, 2014
58. "Oxidative markers in five Iranian alfalfa (Medicago sativa L.) cultivars under salinity stress"
    Nader Chaparzadeh, Faramarz Mehrnejad
    Iranian Journal of Plant Physiology, Vol. 3, No 4, 2013
59. "Interaction of Piscidin-1 with zwitterionic versus anionic membranes: a comparative molecular dynamics study"
    Arezo Rahmanpour, Mohamad Mehdi Ghahremanpour, Faramarz Mehrnejad, Majid Erfani Moghadam
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 31, No 12, pp.1393-1403, 2012
60. "A new efficient protocol for directed differentiation of retinal pigmented epithelial cells from normal and retinal disease induced pluripotent stem cells"
    Azadeh Zahabi , Ebrahim Shahbazi , Hamideh Ahmadieh , Nafiseh Hassani , Mahdi Totonchi , A Taei , Najmeh Sadat Masoudi , Marziyeh Ebrahimi , Naser Aghdami , Ali Seifinejad , Faramarz Mehrnejad, N Daftarian , Ghasem Hosseini Salekdeh , Hossein Baharvand
    STEM CELLS AND DEVELOPMENT, Vol. 21, No 12, pp.2262-2272, 2012
61. "Role of hydrophobic forces and backbone hydrogen bonding on helical stability of peptide encapsulated into single wall carbon nanotubes"
    Mahmoud Khadem Maaref , Faramarz Mehrnejad, Naser Arzani Zonoz , Mohammad Mehdi Ghahremanpour
    Journal of Computational and Theoretical Nanoscience, Vol. 9, No 6, pp.783-188, 2012
62. "Effects of osmolytes on the helical conformation of model peptide : molecular dynamics simulation"
    Faramarz Mehrnejad, Mohammad Mehdi Ghahremanpour , Mahmoud Khadem Maaref , Farahnoosh Doustdar
    JOURNAL OF CHEMICAL PHYSICS, Vol. 134, No 3, pp.35104-7, 2011
63. "Synthesis of Two Compounds with Self - Assembled Monolayer Properties : Riboflavin 2', 3', 4' , 5' Tetra Octadecanoate & Bis ( Phosphatidyl Ethanol ) Protoporphyrin IX Amide"
    Mohammad Mirzaei Salehabady , Faramarz Mehrnejad, Akbar Heidari , Mohammad Nabi Sar Bouloki, Hossein Naderi Manesh
    IRANIAN JOURNAL OF CHEMISTRY & CHEMICAL ENGINEERING-INTERNATIONAL ENGLISH EDITION, Vol. 30, No 3, pp.109-112, 2011
64. "مطالعه ساختار و دینامیک ال-آسپارژیناز در حضور پلیمر پلی (لاکتیک اسید) به کمک شبیه سازی دینامیک مولکولی"
    سما الزوینی، فرامرز مهر نژاد، یاسمن محمودی، علی حسین رضایان قیه باشی، محمد برشان تشنیزی
    مجله پژوهشهای سلولی وملکولی (مجله زیست شناسی ایران)، نسخه -، 1401
65. "شبیه سازی دینامیک مولکولی آنزیم استیل کولین استراز در حضور نانوذرات طلا"
    حنانه اکبرنژاد، محمد برشان تشنیزی، رضا حسن ساجدی، فرامرز مهر نژاد
    مجله پژوهشهای سلولی وملکولی (مجله زیست شناسی ایران)، نسخه 35، شماره 1، 1401
66. "مطالعه اثر نانولوله های کربنی چندجداره روی هپسیدین 20 انسانی با استفاده از شبیه سازی دینامیک مولکولی"
    رضا رسول زاده، فرامرز مهر نژاد، مجید تقدیر، پریچهر یغمایی
    زیست فناوری – دانشگاه تربیت مدرس، نسخه 11، شماره 1، 1398
67. "مطالعه برهمکنش نانولوله کربنی دو دیواره با هورمون محرکه فولیکولی (FSH) به کمک شبیه سازی دینامیک مولکولی"
    یاسمن محمودی، فرامرز مهر نژاد، خسرو خلیفه
    Journal of Cell and Molecular Research، نسخه 32، شماره 3، 1398
68. "بررسی اثر UV روی فرایند فروشویی زیستی اورانیوم در باکتری Acidithiobacillus sp. FJ2 و اثر احتمالی آن روی توالی ژن coxB"
    رقیه جعفرپور، فائزه فاطمی، فرامرز مهر نژاد، اکرم عیدی
    زیست شناسی میکروارگانیسم ها، نسخه 3، شماره 27، صفحات:95-111، 1397
69. "برهم کنش بین پپتید ضدمیکروبی پارداکسین با غشای D PPC به کمک شبیه سازی دینامیک مولکولی"
    فرحنوش دوستدار، راحله اقدمی، فرامرز مهر نژاد، نادر چاپارزاده
    زیست فناوری – دانشگاه تربیت مدرس، نسخه 9، شماره 1، 1396
70. "اثر کلسیم بر فعال سازی ترمولیزین توسط نمک"
    عبدالعلی وارسته، سید محسن اصغری، مجید تقدیر ، محمود رضا آقا معالی آقا معالی، محمد پاژنگ، فرامرز مهر نژاد
    Journal of Cell and Molecular Research، نسخه 30، شماره 1، صفحات:44-58، 1396
71. "تاثیر یون های فلزی بر فعالیت و پایداری آنزیم های پیرازین آمیداز نوع وحشی و جهش یافته"
    مهرنوش صفرزاده، محمد پاژنگ ، فرامرز مهر نژاد، فرحنوش دوستدار، نادر چاپارزاده ، داود ربیعی
    زیست شناسی میکروارگانیسم ها، نسخه 5، شماره 18، صفحات:169-182، 1395
72. "کلونینگ و تولید نوترکیب آنزیم گرانزیم M انسانی"
    نرجس خازه، محمد پاژنگ، فرامرز مهر نژاد، نادر چاپارزاده
    مجله دانشگاه علوم پزشکی زنجان، نسخه 23، شماره 100، صفحات:53-64، 1394
73. "بررسی اثر ضد باکتری عصاره های آبی گیاهان بومی ایران بر روی سویه استاندارد سودوموناس آئروژینوزا"
    صالح جامع در، مهدی ضرابی، فرامرز مهر نژاد، وحید یاور پور کردستانی
    فصلنامه میکروب شناسی پزشکی ایران، نسخه 2، شماره 1393، 1393
74. "ویژگی های سیستم ترشحی نوع 3 در نمونه های سودوموناس ائروژینوزای جدا شده از بیماران مبتلا به سیستیک فیبروزیس"
    رباب آذرگون، فرحنوش دوستدار، قمرتاج خانبابایی، مونا قاضی، فرامرز مهر نژاد، حسین گودرزی
    پژوهش در پزشکی، نسخه 37، شماره 3، 1392
75. "تاثیر حلال های آلی بر روی فعالیت و پایداری آنزیم تریپسین و پایدارسازی آن با ساکارز"
    محمد پاژنگ، فرامرز مهر نژاد، نادر چاپارزاده، آرزو رحمن پور اقدم
    زیست فناوری – دانشگاه تربیت مدرس، نسخه 4، شماره 1، 1392

مقالات علمی ارائه شده در همایش‌ها

1. "Unraveling Protein Dynamics in the Presence of Cellulose Nanocrystals: An Essential Dynamics Analysis"
   Emami Hamed, Masoud Shahriari, Yasaman Mahmoodi, Faramarz Mehrnejad
   The 12th National Conference and the 3rd International Bioinformatics Conference, 2024
2. "Polymeric nanoparticles for efficient drug delivery system"
   Sama J. Al-zuwaini, Faramarz Mehrnejad, Yasaman Mahmoodi, Ali Hossein Rezayan, Mohammad Barshan Tashnizi
   3rd Intl. Conference on Researches in Nanotechnology & Nanoscience, 2023
3. "Demonstration of cellular dynamic behavior in response to DNA damage through gene regulatory network analysis of single-cell resolution DNA repair phenotype and gene expression multi-omics dataset"
   Abolfazl Arab, Sama Goliaei, Faramarz Mehrnejad
   The first international conference and the tenth national bioinformatics conference of Iran, 2022
4. "Structure, Dynamics, and Bilayers Perturbing Potency of Antimicrobial Peptides into the Different Membranes: A Molecular Dynamics Simulation Study"
   Faramarz Mehrnejad
   The 1st International and 3rd National Conference on Biomathematics, 2022
5. "The Protein Encapsulation in the Modified Chitosan Self-Aggregated Nanoparticles"
   Faramarz Mehrnejad, Somayeh Khanmohammadi
   21th National & 9th International Congress on Biology, 2021
6. "Study of Antimicrobial Peptides Encapsulation into the Polymeric and Phospholipid Nanoparticles using Molecular Dynamics Simulation"
   Faramarz Mehrnejad
   The Second International Conference on Applications of Advanced Technologies: Biological Sciences (ICAAT2), 2021
7. "Optical Interferometry for detection of protein via antibody-antigen interaction"
   Masood Amirabadizadeh, Fereshteh Rahimi, Azizolah Shafikhani, Faramarz Mehrnejad
   2nd International and 10th National Iranian Biotechnology Congress, 2017
8. "Effects of sorbitol and glycerol on the structure, dynamics, and stability of Mycobacterium tuberculosis pyrazinamidase."
   Mohadeseh Khajehzadeh, Faramarz Mehrnejad, Mohammad Pazhang, Farahnoosh Doustdar
   2nd Asian African Congress of Mycobacteriology, 2017
9. "Interactions of pardaxin antimicrobial peptide with model membranes"
   Faramarz Mehrnejad, Raheleh Aghdami, Farahnoosh Doustadr, Mahmoud Khadem-maaref, Ali Reza Rastkar Ebrahimzadeh, Nader Chaparzadeh
   10th European Biophysics Congress, 2015
10. "Study of the divalent metal binding site of pyraz- inamidase using density functional theory"
    Mahmoud Khadem-maaref, Faramarz Mehrnejad, Arash Phirouznia, Habib Ebrahimnazhad Rahbari
    10th European Biophysics Congress, 2015
11. "STRUCTURAL AND DYNAMICAL STUDY OF BOVINE CARBONIC ANHYDRASE II IN THE PRESENCE OF SUBSTRATE: AN ESSENTIAL DYNAMICS AND MOLECULAR DYNAMICS SIMULATION STUDY"
    Elham Morad, Bahram Golyaei, Faramarz Mehrnejad
    Biophysical Society 59th Annual Meeting, 2015
12. "Spectroscopic studies on the interaction of bovine serum albumin with NMBPS (Nano Magneto Bio Polymer System) nanoparticle"
    Masomeh Taran, Ghassem Amoabediny, Faramarz Mehrnejad, Faezeh Kashanian
    5th International Congress on Nanoscience & Nanotechnology (ICNN2014), 2014
13. "Study of Anticancer Peptide Interacting with Model Membranes: Molecular Dynamics Simulation"
    Raheleh Aghdami, Faramarz Mehrnejad, Nader Chaparzadeh, Ali Reza Rastkar Ebrahimzadeh
    First International and 13th Iranian Genetics Congress, 2014
14. "High Level Expression and Purification of PZase and Study of Osmolyte Effects on its Activity"
    Mohadeseh Khahjezadeh, Mohammad Pazhang, Nader Chaparzadeh, Farahnoosh Doustdar, Mehrnoosh Safarzadeh, Faramarz Mehrnejad
    First International and 13th Iranian Genetics Congress, 2014
15. "Cloning and Expression of GranzymeM cDNA"
    Narges Khazeh, Mohammad Pazhang, Faramarz Mehrnejad, Nader Chaparzadeh
    First International and 13th Iranian Genetics Congress, 2014
16. "Prediction of Bovine Carbonic Anhydrase II binding sites by computational solvent mapping"
    Elham Morad, Bahram Golyaei, Faramarz Mehrnejad, Ali Akbar Saboury
    ICB 2014 : 5th Iran Conference on Bioinformatics, 2014
17. "Molecular Dynamics Simulation Studies on stabilizers used in immunoglobulin products"
    Masoumeh Ali Mohammadi, Faramarz Mehrnejad, Mahmood Khadem-maaref, Nader Chaparzadeh
    12th International Congress of Immunology & Allergy of Iran Milad Tower-Tehran-Iran, 2014
18. "None Viral Gene Delivery in Renal Epithelial Cells Using PEI-oligocation Conjugates"
    F. Oroojalian, Ali Hossein Rezayan, Kh. Abnous, Faramarz Mehrnejad, H. Parhiz, M. Ramezani
    The 1 st middle east & the 6th Iranian Controlled Release Conference 2014, 2014
19. "Analysis of Quorum sensing related genes in virulence of different genotypes of Pseudomonas aeroginosa isolated from keratitis and conjunctivities."
    Farahnoosh Doustdar, Faramarz Mehrnejad, Zohreh Abedinyfar, Fahimeh Asadi Amoli, Fatemeh Karimi, Robab Azargun, Hossein Goudarzi
    14th International Iranian Congress of Microbiology, 2013
20. "The Study of Hydrogen Bonds Between Curcuminoids and C1B Subdomain of Protein Kinase C By Docking Method"
    Jaber Jahanbin, Faramarz Mehrnejad, Masoomeh Eghaeei, Alireza Rastkar Ebrahimzadeh
    1st Tabriz International Life Science Conference and 12thIran Biophysical Chemistry Conference (TILSC & IBCC), 2013, Tabriz, Iran, 2013
21. "Effects of Different metals on activity of wild type and mutant pyrazinamidases"
    Mehrnoosh Safarzadeh, Faramarz Mehrnejad
    1st Tabriz International Life Science Conference and 12thIran Biophysical Chemistry Conference (TILSC & IBCC), 2013, Tabriz, Iran, 2013
22. "Effects of osmolytes on the Protein stability: Molecular dynamics simulation"
    Masumeh Alimohammadi, Faramarz Mehrnejad, Mahmoud Khadem Maaref, Nader Chaparzadeh
    1st Tabriz International Life Science Conference and 12thIran Biophysical Chemistry Conference (TILSC & IBCC), 2013, Tabriz, Iran, 2013
23. "Phylogenetic Analysis of HLA-B27 Various Alleles based on Coding Sequence Using in silico AFLP Technique"
    Fateme Mortazavi, Ghassem Amoabediny, Faramarz Mehrnejad, Ali Hossein Rezayan, Morteza Hosseini
    3rd International Student Biotechnology Congress, 2013
24. "Potential of Synthetic Histidine-Rich Antimicrobial Peptide as Agent Cancer Therapy: Molecular Dynamics Simulation Study"
    Matin Islami, Faramarz Mehrnejad, Majid Taghdir, Mahmoud Khadem Maaref
    4th Bioinformatics Conference, 2012
25. "DFT study of the electronic structures and energetics of different isomers of cuecumin"
    Masoomeh Eghaeei, Jaber Jahanbin, Faramarz Mehrnejad, Alireza Rastkar Ebrahimzadeh
    15thIIranianPhysiccalChemistryConference, 2012
26. "A Computational Analysis of Interactions of Curcuminoids with Human Serum Albumin"
    Masoomeh Eghaeei, Jaber Jahanbin, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    The First International & 11th Iran Biophysical Chemistry Conference 13-15 June 2012 Ardabil University of Medical Sciences, Ardabil, Iran, 2012
27. "Molecular Cloning Overexpression and Biochemical Characterization of Pyrazinamidase from M. Tuberculosis"
    Mehrnoosh Safarzadeh, Faramarz Mehrnejad, Mohammad Pazhang, Davod Rabiei, Nader Chaparzadeh, Farahnoosh Doustdar, Mohammad Hosseini
    The First International 11th Iran Biophysical Chemistry Conference, 2012
28. "Study of Interactions Between Antimicrobial Peptide LAH4 and Model Membranes"
    Matin Islami, Faramarz Mehrnejad, Majid Taghdir, Mahmoud Khadem Maaref
    The First International 11th Iran Biophysical Chemistry Conference, 2012
29. "Study of the Structure-Activity Relationship of Pyraziamidase Using Molecular Docking and Molecular Dynamics Simulations"
    Davod Rabiei, Faramarz Mehrnejad, Mohammad Pazhang, Mehrnoosh Safarzadeh, Nader Chaparzadeh, Farahnoosh Doustdar, Mahmoud Khadem Maaref, Mohammad Hosseini
    The First International 11th Iran Biophysical Chemistry Conference, 2012
30. "The Effect of Sucrose and Trehalose on the Structure and Dynamics of Luciferase: Molecular Dynamics Simulation Study"
    Masoumeh Ali Mohammadi, Faramarz Mehrnejad, Mahmoud Khadem Maaref, Nader Chaparzadeh, Saman Hosseinkhani
    The First International 11th Iran Biophysical Chemistry Conference, 2012
31. "طراحی و سنتز نانوذرات کیتوزان اصلاح شده دوگانه دوست برای رسانش پروتئینهای درمانی"
    شیرین شاه آبادی، فرامرز مهر نژاد
    بیست و سومین کنگره ملی و یازدهمین کنگره بین المللی زیست شناسی ایران، 1403
32. "بررسی دینامیک و ساختار پروتئین های درمانی در فرمولاسیون های دارورسانی نانوذرات"
    فرامرز مهر نژاد
    بیست و سومین کنگره ملی و یازدهمین کنگره بین المللی زیست شناسی ایران، 1403
33. "تاثیر تغییرات pH بر ساختار و دینامیک انسولین: یک مطالعه شبیه سازی دینامیک مولکولی تمام اتمی"
    شیرین جلالی، حامد امامی، شیرین شاه آبادی، فرامرز مهر نژاد
    پنجمین کنفرانس علوم پروتئینی و پپتیدی ایران، 1403
34. "طراحی و مطالعه نانوسامانه های پلیمری به منظور انکپسوله کردن پروتئینهای دارویی"
    فرامرز مهر نژاد
    ششمین همایش ملی پلیمر ایران، 1400
35. "مطالعه ساختار و دینامیک پروتئینها در حضور افزودنیها با استفاده شبیه سازی دینامیک مولکولی"
    فرامرز مهر نژاد
    هشتمین کنگره ملی زیست شناسی و علوم طبیعی ایران، 1400
36. "بررسی نقش یونهای فلزی درعملکردآنزیم پیرازین آمیداز با استفاده محاسبات کوانتومی"
    محمود خادم معارف ، فرامرز مهر نژاد، آرش فیروزنیا
    پنجمین کنگره عناصر کمیاب ایران، 1395
37. "شبیه سازی دینامیک ملکولی متالو پروتئین ها"
    فرامرز مهر نژاد
    پنجمین کنگره عناصر کمیاب ایران، 1395
38. "بررسی اثرات نانوذرات طلا برآنزیم استیل کولین استراز"
    حنانه اکبرنژاد، حسین رحمانی، فرامرز مهر نژاد، رضا حسن ساجدی، محمد قدمیاری ، محمد برشان تشنیزی
    پنجمین کنگره عناصر کمیاب ایران، 1395
39. "مطالعه برهمکنش HLA G با دو گیرنده LILRB1 و LILRB2"
    مائده صدقیان، پرویز عبدالمالکی ، فرامرز مهر نژاد
    کنفرانس بین المللی مهندسی و علوم کاربردی، 1394
40. "نانولوله کربنی تک دیوره:یک سیستم هدفمند انتقال برای داروی ضرسرطان کورکومین"
    معصومه ایقایی ، جابر جهان بین ، فرامرز مهر نژاد، علیرضا راستکار ابراهیم زاده
    دومین همایش ملی فناوری نانو از تئوری تا کاربرد، 1392
41. "بررسی تاثیر نانولوله بر افزایش حلالیت ایزومرهای مختلف کورکومین با روشهای شبیه سازی دینامیک مولکولی"
    جابر جهان بین، فرامرز مهر نژاد، معصومه ایقایی، علیرضا راستکار ابراهیم زاده، صادق افشاری
    کنفرانس نانو محاسباتی، 1391