Journal Paper

1. "Distinct Dynamics of Migratory Response to PD-1 and CTLA-4 Blockade Reveals New Mechanistic Insights for Potential T-Cell Reinvigoration following Immune Checkpoint Blockade"
   Fatemeh Safaeifard, Bahram Golyaei, amir aref, MOHAMMAD-HADI FOROUGHMAND-ARAABI, Sama Goliaei, Jochen Lorch, Jenkins Russel, David Barbie, Seyed Peyman Shariatpanahi, Ruegg Curzio
   CELLS, Vol. 11, No 1, 2022
2. "Embedding ranking-oriented recommender system graphs"
   Taher Hekmatfar, Saman Haratizadeh, Sama Goliaei
   EXPERT SYSTEMS WITH APPLICATIONS, Vol. 181, No 1, 2021
3. "Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data"
   Leila Bagha Arabani, Sama Goliaei, MOHAMMAD-HADI FOROUGHMAND-ARAABI, Seyed Peyman Shariatpanahi, Bahram Golyaei
   BMC BIOINFORMATICS, Vol. 22, No 1, 2021
4. "New recommender system evaluation approaches based on user selections factor"
   Mohamad Kshour, Morteza Ebrahimi, Sama Goliaei, Rami Tawil
   Heliyon, Vol. 7, No 7, 2021
5. "Abstract Geometrical Computation 10: An Intrinsically Universal Family of Signal Machines"
   Florent Becker, Tom Besson, Jerome Durand-lose, Aurelien Emmanuel, MOHAMMAD-HADI FOROUGHMAND-ARAABI, Sama Goliaei, SHAHRZAD HEYDARSHAHI
   ACM Transactions on Computation Theory, Vol. 13, No 1, 2021
6. "Centralized Path Planning for Multi-aircraft in the Presence of Static and Moving Obstacles"
   Masoud Mirzaei Teshnizi Mirzaei Teshnizi, Amir Reza Kosari, Sama Goliaei, Saeed Shakhesi
   International Journal of Engineering, Transactions B: Applications, Vol. 33, No 5, 2020
7. "A Novel Pattern Matching Algorithm for Genomic Patterns Related to Protein Motifs"
   Mohammad-hadi Foroughmand-araabi, Sama Goliaei, Bahram Golyaei
   Journal of Bioinformatics and Computational Biology, Vol. 18, No 1, pp.2050011-1, 2020
8. "Evaluating Nondeterministic Signal Machine Relative Complexity: A case study on Dominating Set Problem"
   Sahar Ardalan, Sama Goliaei, Ayaz Isazadeh
   International Journal of Innovative Computing and Applications, Vol. 11, No 1, 2020
9. "The number of followings as an influential factor in rumor spreading"
   Amirhosein Bodaghi, Sama Goliaei, Mostafa Salehi
   APPLIED MATHEMATICS AND COMPUTATION, Vol. 357, No 1, pp.167-184, 2019
10. "A Game-Theoretical Network Formation Model for C.elegans Neural Network"
    Mohammad Khajezadeh, Sama Goliaei, Hadi Veisi
    Frontiers in Computational Neuroscience, Vol. 13, No 1, 2019
11. "CAMIRADA: Cancer microRNA association discovery algorithm, a case study on breast cancer"
    Sepideh Shamsizadeh, Sama Goliaei, Zahra Razaghi Moghadam Kashani
    JOURNAL OF BIOMEDICAL INFORMATICS, Vol. 94, No 1, 2019
12. "A Boolean network control algorithm guided by forward dynamic programming"
    Mohammad Moradi, Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    PLoS One, Vol. 1, No 1, pp.1-21, 2019
13. "A NOVEL MODEL FOR RUMOR SPREADING ON SOCIAL NETWORKS WITH CONSIDERING THE INFLUENCE OF DISSENTING OPINIONS"
    Amirhosein Bodaghi, Sama Goliaei
    ADVANCES IN COMPLEX SYSTEMS, Vol. 21, No 6, pp.1850011-1, 2018
14. "Modeling the Probability Distribution of the Bacterial Burst Size via a Game-Theoretic Approach"
    Seyed Amir Malekpour, Parsa Pakzad, Mohammad-hadi Foroughmand-araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Golyaei, Mehdi Sadeghi
    JOURNAL OF COMPUTATIONAL BIOLOGY, Vol. 16, No 4, pp.1850012-1, 2018
15. "Computational Complexity of Wavelength-Based Machine with Slightly Interacting Sets"
    Sama Goliaei, Mohammadhadi Foroughmandaraabi
    International Journal of Unconventional Computing, Vol. 13, No 2, pp.117-137, 2017
16. "CytoGTA: A cytoscape plugin for identifying discriminative subnetwork markers using a game theoretic approach"
    Saman Farahmand, Mohammad Hadi Foroughmand, Sama Goliaei, Zahra Razaghi Moghadam Kashani
    PLoS One, Vol. 12, No 10, 2017
17. "HybridRanker: Integrating network topology and biomedical knowledge to prioritize cancer candidate genes"
    Zahra Razaghi Moghadam Kashani, Razieh Abdollahi, Sama Goliaei, Morteza Ebrahimi
    JOURNAL OF BIOMEDICAL INFORMATICS, Vol. 64, No 1, pp.139-146, 2016
18. "GTA: a Game Theoretic Approach to Identifying Cancer Subnetwork Markers"
    Saman Farmhand, Sama Goliaei, Naser Ansari Pour, Zahra Razaghi Moghadam Kashani
    Molecular BioSystems, 2015
19. "Computation with optical sensitive sheets"
    Sama Goliaei, سعید جلیلی
    Natural Computing, Vol. 14, No 3, pp.1-14, 2015
20. "Codon usage and protein sequence pattern dependency in different organisms: a Bioinformatics approach"
    Mohammad-hadi Foroughmand-araabi, Bahram Golyaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei
    Journal of Bioinformatics and Computational Biology, Vol. 13, No 2, 2014
21. "A 2-dimensionalopticalarchitectureforsolvingHamiltonian path problembasedonmicroringresonators"
    Nadim Shaker, سعید جلیلی, وحید احمدی, Aref Rasoulzadehzali, Sama Goliaei
    OPTICS AND LASER TECHNOLOGY, Vol. 65, No 1, pp.56-65, 2014
22. "On the complexity of nonuniform wavelength-based machine"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    Natural Computing, Vol. 13, No 2, pp.269-283, 2014
23. "Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    Lecture Notes in Computer Science, Vol. 7956, No 1, pp.90-101, 2013
24. "An Optical Polynomial Time Solution for the Satisfiability Problem"
    Sama Goliaei, سعید جلیلی
    Lecture Notes in Computer Science, Vol. 7715, No 1, pp.15-24, 2013
25. "An Optical Wavelength-Based Computational Machine"
    Sama Goliaei, سعید جلیلی
    International Journal of Unconventional Computing, Vol. 9, No 1, 2013
26. "An optical solution to the 3-SAT problem using wavelength based selectors"
    Sama Goliaei, سعید جلیلی
    JOURNAL OF SUPERCOMPUTING, Vol. 62, No 2, pp.663-672, 2012
27. "Light-Based Solution for the Dominating Set Problem"
    Sama Goliaei, سعید جلیلی, Javad Salimi Sartakhti
    APPLIED OPTICS, Vol. 29, No 51, pp.6979-6983, 2012
28. "Lower Bounds on the Complexity of the Wavelength-Based Machine"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    Lecture Notes in Computer Science, Vol. 7445, No 1, pp.94-105, 2012

Conference Paper

1. "Demonstration of cellular dynamic behavior in response to DNA damage through gene regulatory network analysis of single-cell resolution DNA repair phenotype and gene expression multi-omics dataset"
   Abolfazl Arab, Sama Goliaei, Faramarz Mehrnejad
   The first international conference and the tenth national bioinformatics conference of Iran, 2022
2. "A novel algorithm to identification of breast cancer biomarkers"
   Masoumeh Oveisi, Sama Goliaei, Zahra Razaghi Moghadam Kashani
   The 7th Conference of Bioinformatics, 2018
3. "Personalized Cancer Driver Gene Identification, A Network Based Approach"
   Ghazaleh Niknam, Sama Goliaei, Zahra Razaghi Moghadam Kashani
   The 7th Conference on Bioinformatics, 2017
4. "Dealing with Nondeterminism in Signal Machines"
   Rakhshan Harifi, Sama Goliaei
   International Conference of New Worlds of Computation 2017, 2017
5. "Intrinsic Universal Family of Signal Machines"
   Mohammadhadi Foroughmandaraabi, Jerome Durand-lose, Florent Becker, Sama Goliaei
   International Conference of New Worlds of Computation 2017, 2017
6. "A Wearable Device for Continuous Cardiorespiratory System Monitoring"
   Negar Mohammadi, Hamidreza Memarzadeh Tehran, Sama Goliaei
   The 41st IEEE Conference on Local Computer Networks (LCN), 2016
7. "A Nondeterministic Model for Abstract Geometrical Computation"
   Rakhshan Harifi, Sama Goliaei
   Computability in Europe 2016, 2016
8. "Identifying Cancer Subnetwork Markers Using Game Theory Method"
   Saman Farmhand, Sama Goliaei, Zahra Razaghi Moghadam Kashani, Sina Farahmand
   International Conference on Biomedical and Health Informatics, 2015
9. "Associating Protein Interactions with Disease Comorbidity to Prioritize Colorectal Cancer Genes"
   Seyyedeh Razieh Abdollahi Demneh, Sama Goliaei, Zahra Razaghi Moghadam Kashani
   International Conference on Biomedical and Health Informatics, 2015
10. "Global Topology of Codon Usage Equality Networks of Escherichia coli Essential Genes"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
11. "Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    12th International Conference of Unconventional Computation and Natural Computation, 2013
12. "Lower Bounds on the Complexity of the Wavelength-Based Machine"
    Sama Goliaei, Mohammad-hadi Foroughmand-araabi
    11th International Conference Unconventional Computation & Natural Computation 2012, 2012
13. "An Optical Polynomial Time Solution for the Satisfiability Problem"
    Sama Goliaei, سعید جلیلی
    Optical Supercomputing 2012, 2012
14. "An Algorithm for Boolean Network Control"
    Mohammad Moradi, Sama Goliaei
    2nd International Conference on New Technologies Applications in Engineering, 2016