Journal Paper

1. "Influence of amphiphilic chitosan-deoxycholic acid-polyacrylic acid copolymer on activity, dynamics, and structure of human lysozyme and pyrazinamidase"
   Somayeh Khanmohammadi, Zahra Lotfi-Sousefi, Shirin Shahabadi, Mohammad Yahyaei, Hossein Naderi-Manesh, Faramarz Mehrnejad
   COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, Vol. 702, 2024
2. "Comparative study of the interactions between C60 fullerene and SARS-CoV-2, HIV, eukaryotic, and bacterial model membranes: Insights into antimicrobial strategies with C60-peptide hybrids"
   Masoud Shahriari, Majid Jafari, Farahnoosh Doustdar , Faramarz Mehrnejad
   International Journal of Biological Macromolecules, Vol. 271, 2024
3. "Recent developments of nanomedicine delivery systems for the treatment of pancreatic cancer"
   Nastaran Rezaei, Masoud Shahriari, Faramarz Mehrnejad
   JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, Vol. 79, No 1, 2022
4. "Insight into molecular mechanism of human insulin encapsulation into the polyacrylic acid/deoxycholic acid-modified chitosan nanogel: An experimental and molecular dynamics investigation"
   Bahareh Tavasoli, Somayeh Khanmohammadi, Mohammad Yahyaei, Mohammad Barshan Tashnizi, Faramarz Mehrnejad
   JOURNAL OF MOLECULAR LIQUIDS, Vol. 369, No 1, 2022
5. "Human serum albumin adsorption on cellulose nanocrystal: A spectroscopy and molecular dynamics simulation research"
   Masoud Shahriari, Faramarz Mehrnejad, Somayeh Khanmohammadi, Yasaman Mahmoodi, Mohammad Reza Youssefian, Mohammad Reza Vakili, Afsaneh Lavasanifar
   APPLIED SURFACE SCIENCE, Vol. 597, No 27, 2022
6. "Atomistic insight into the luminal allosteric regulation of vesicular glutamate transporter 2 by chloride and protons: An all-atom molecular dynamics simulation study"
   Kiana Rostamipour, Reza Talandashti, Faramarz Mehrnejad
   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Vol. -, 2022
7. "A Survey of Gasoline Ameliorator, Methyl-Tert-Butyl Ether (MTBE) on Bovine Serum Albumin: A Spectroscopy and Molecular Dynamic Simulation Study"
   Ebrahim Shahmansoorian, Seyed-Mohammad Atyabi, Parichehreh Yaghmaei, Faramarz Mehrnejad
   Iranian Journal of Biotechnology, Vol. 20, No 3, 2022
8. "Molecular insights into the crystalline nanocellulose and human lysozyme interactions: An experimental and theoretical research"
   Yasaman Mahmoodi, Faramarz Mehrnejad, Somayeh Khanmohammadi, Masoud Shahriari, Fereshteh Rahimi, Mohammad Reza Vakili, Afsaneh Lavasanifar
   International Journal of Biological Macromolecules, Vol. -, 2022
9. "Insights into the Molecular-Level details of betaine interactions with Laccase under various thermal conditions"
   Somayeh Mojtabavi, Majid Jafari, Nasrin Samadi, Faramarz Mehrnejad, MohammadAli Faramarzi
   JOURNAL OF MOLECULAR LIQUIDS, Vol. 339, No 19, 2021
10. "Design and synthesis of polyacrylic acid/deoxycholic acid-modified chitosan copolymer and a close inspection of human growth hormone-copolymer interactions: An experimental and computational study"
    Somayeh Khanmohammadi, Faramarz Mehrnejad, Zahra Lotfi-Sousef, Mohammad Yahyaei, Hossein Naderi-manesh
    COLLOIDS AND SURFACES B-BIOINTERFACES, Vol. 206, No 10, 2021
11. "Molecular modeling prediction of albumin-based nanoparticles and experimental preparation, characterization, and in-vitro release kinetics of prednisolone from the nanoparticles"
    Fatemeh Kaboli, Faramarz Mehrnejad, Ali Nematollahzadeh
    JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, Vol. 64, No 4, 2021
12. "Molecular Insights into Pore Formation Mechanism, Membrane Perturbation, and Water Permeation by the Antimicrobial Peptide Pleurocidin: A Combined All-Atom and Coarse-Grained Molecular Dynamics Simulation Study"
    Reza Talandashti, Faramarz Mehrnejad, Kiana Rostamipour, Farahnoosh Doustdar , Afsaneh Lavasanifar
    JOURNAL OF PHYSICAL CHEMISTRY B, Vol. 125, No 26, pp.7163-7176, 2021
13. "Refinement of coding SNPs in the human aryl hydrocarbon receptor gene using ISNPranker: An integrative-SNP ranking web-tool"
    Younes Aftabi, Saleh Rafei, Habib Zarredar, Amir Amiri-Sadeghan, Zahra Khoshkam, Mohsen Akbari-Shahpar, Ensiyeh Seyedrezazadeh, Faramarz Mehrnejad, Majid Khalili, Sasan Fereidouni, Paige Lawrence
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 90, No 2, 2021
14. "Effect of the lipid composition and cholesterol on the membrane selectivity of low generations PAMAM dendrimers: A molecular dynamics simulation study"
    Majid Jafari, Faramarz Mehrnejad, Reza Talandashti, Farahnoosh Doustdar , MohammadReza Vakili, Afsaneh Lavasanifar
    APPLIED SURFACE SCIENCE, Vol. 540, No 1, 2021
15. "Insight into the Microcosm of the Human Growth Hormone and Its Interactions with Polymers and Copolymers: A Molecular Dynamics Perspective"
    Zahra Lotfi, Faramarz Mehrnejad, Somayeh Khanmohammadi, Fatemeh Kaboli
    LANGMUIR, Vol. 37, No 1, pp.90-104, 2020
16. "Molecular level insight into stability, activity, and structure of Laccase in aqueous ionic liquid and organic solvents: An experimental and computational research"
    Majid Jafari, Somayeh Mojtabavi, Mohammad Ali Faramarzi, Faramarz Mehrnejad, Mohammad Soleimani, Rohollah Mirjani
    JOURNAL OF MOLECULAR LIQUIDS, Vol. 317, No 1, 2020
17. "Structural Studies on an Anti-Angiogenic Peptide Using Molecular Modeling"
    Elham Assarah, Faramarz Mehrnejad, Seyedmohsen Asghari
    Iranian Journal of Biotechnology, Vol. 18, No 4, 2020
18. "Effect of the Met148Leu mutation on the structure and dynamics of the rusticyanin protein from Acidithiobacillus sp. FJ2"
    Roghayeh Jafarpour, Faezeh Fatemi, Akram Eidi, Faramarz Mehrnejad
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 39, No 11, pp.4122-4132, 2020
19. "Molecular Basis for Membrane Selectivity of Antimicrobial Peptide Pleurocidin in the Presence of Different Eukaryotic and Prokaryotic Model Membranes"
    Reza Talandashti, Hamid Mahdiuni, Majid Jafari, Faramarz Mehrnejad
    Journal of Chemical Information and Modeling, Vol. 59, No 7, pp.3262-3276, 2019
20. "The role of intermolecular interactions on the encapsulation of human insulin into the chitosan and cholesterol-grafted chitosan polymers"
    Safoura Salar, Majid Jafari, Fatemeh Kaboli, Faramarz Mehrnejad
    CARBOHYDRATE POLYMERS, Vol. 208, No 3, pp.345-355, 2019
21. "A cyclic peptide reproducing the α1 helix of VEGF-B binds to VEGFR-1 and VEGFR-2 and inhibits angiogenesis and tumor growth"
    Elham Assareh, Faramarz Mehrnejad, Kamran Mansouri, Ahmad Reza Esmaeili Rastaghi, Hossein Naderi-Manesh, Seyedmohsen Asghari
    BIOCHEMICAL JOURNAL, Vol. 476, No 4, pp.645-663, 2019
22. "Molecular Self-Assembly Strategy for Encapsulation of an Amphipathic α-Helical Antimicrobial Peptide into the Different Polymeric and Copolymeric Nanoparticles"
    Majid Jafari, Farahnoosh Doustdar, Faramarz Mehrnejad
    Journal of Chemical Information and Modeling, Vol. 59, No 1, pp.550-563, 2018
23. "Computational insights into pH‐dependence of structure and dynamics of pyrazinamidase: A comparison of wild type and mutants"
    Reza Esmaeeli, Faramarz Mehrnejad, Mohammad Mir-derikvand, Niloofar Gopalpoor
    JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 120, No 2, pp.2502-2514, 2018
24. "Molecular insights into the interactions of GF-17 with the gram-negative and gram-positive bacterial lipid bilayers"
    Samira Jahangiri, Majid Jafari, Mehdi Arjomand, Faramarz Mehrnejad
    JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 119, No 11, pp.9205-9216, 2018
25. "Ig-like Domain in Endoglucanase Cel9A from Alicyclobacillus acidocaldarius Makes Dependent the Enzyme Stability on Calcium"
    Mohammad Pazhang, Fereshteh Younesi, Faramarz Mehrnejad, Said Najavand, Alireza Tarinejad, Mehrnaz Haghi, Fatemeh Rashno, Khosro Khajeh
    MOLECULAR BIOTECHNOLOGY, Vol. 60, No 9, pp.698-711, 2018
26. "Effects of Single-Walled Carbon Nanotube on the Conformation of Human Hepcidin: Molecular Dynamics Simulation and Binding Free Energy Calculations"
    Reza Rasoolzadeh, Faramarz Mehrnejad, Majid Taghdir, Parichehr Yaghmaei
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 10, No 10, pp.1-24, 2018
27. "Protein adsorption onto polysaccharides: Comparison of chitosan and chitin polymers"
    Mohammad Yahyaei, Faramarz Mehrnejad, Hossein Naderi-manesh, Ali Hossein Rezayan
    CARBOHYDRATE POLYMERS, Vol. 191, pp.191-197, 2018
28. "The potential impact of carboxylic-functionalized multi-walled carbon nanotubes on trypsin: A Comprehensive spectroscopic and molecular dynamics simulation study"
    Maryam Noordadi, Faramarz Mehrnejad, Reza H. Sajedi, Majid Jafari, Bijan Ranjbar
    PLoS One, Vol. 13, No 6, 2018
29. "The combinatorial effects of osmolytes and alcohols on the stability of pyrazinamidase: Methanol affects the enzyme stability through hydrophobic interactions and hydrogen bonds"
    Mohammad Pazhang, Narjes Mardi, Faramarz Mehrnejad, Nader Chaparzadeh
    International Journal of Biological Macromolecules, Vol. 108, No 3, pp.1339-1347, 2018
30. "The Molecular Basis of the Sodium Dodecyl Sulfate Effect on Human Ubiquitin Structure: A Molecular Dynamics Simulation Study"
    Majid Jafari, Faramarz Mehrnejad, Fereshteh Rahimi, Seyedmohsen Asghari
    Scientific Reports, Vol. 8, No 1, 2018
31. "Insight to the molecular mechanisms of the osmolyte effects on Mycobacterium tuberculosis pyrazinamidase stability using experimental studies, molecular dynamics simulations, and free energy calculation"
    Mohadeseh Khajehzadeh, Saeideh Khaleghnejad, Faramarz Mehrnejad, Mohammad Pazhang, Farahnoosh Doustdar
    International Journal of Mycobacteriology, Vol. 7, No 3, 2018
32. "Insight into the interactions, residue snorkeling, and membrane disordering potency of a single antimicrobial peptide into different lipid bilayers"
    Majid Jafari, Faramarz Mehrnejad, Farahnoosh Doustdar
    PLoS One, Vol. 12, No 11, 2017
33. "Follicle-stimulating hormone encapsulation in the cholesterol-modified chitosan nanoparticles via molecular dynamics simulations and binding free energy calculations"
    Mohammad Yahyaei, Faramarz Mehrnejad, Hossein Naderi-manesh, Ali Hossein Rezayan
    EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, Vol. 107, No 108, pp.126-137, 2017
34. "Aryl hydrocarbon receptor gene transitions (c.-742C>T; c.1661G>A) and idiopathic male infertility: a case-control study with in silico and meta-analysis"
    Younes Aftabi, Abasalt Hosseinzadeh Colagar, Faramarz Mehrnejad, Ensiyeh Seyedrezazadeh, Emad Moudi
    Environmental Science and Pollution Research, Vol. 1, No 1, 2017
35. "Understanding the interactions of human follicle stimulating hormone with single-walled carbon nanotubes by molecular dynamics simulation and free energy analysis"
    Yasaman Mahmoodi, Faramarz Mehrnejad, Khosrow Khalifeh
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, Vol. 46, No 6, pp.1-9, 2017
36. "Chitosan Nanoparticles-Trypsin Interactions: Bio-physicochemical and Molecular Dynamics Simulation Studies"
    Safoura Salar, Faramarz Mehrnejad, Reza H. Sajedi, Javad Mohammadnejad Arough
    International Journal of Biological Macromolecules, Vol. 25, No 103, pp.902-909, 2017
37. "Effects of metal-ion replacement on pyrazinamidase activity: A quantum mechanical study"
    Mahmoud Khadem-maaref, Faramarz Mehrnejad, Arash Phirouznia
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, Vol. 73, No 3, pp.24-29, 2017
38. "Identification of the Crucial Residues in the Early Insertion of Pardaxin into Different Phospholipid Bilayers"
    Majid Jafari, Faramarz Mehrnejad, Raheleh Aghdami, Nader Chaparzadeh, Zahra Razaghi Moghadam Kashani, Farahnoosh Doustdar
    Journal of Chemical Information and Modeling, Vol. 2, No 1, 2017
39. "A computational study of the electronic structure and the chemical activity of curcumin and some novel curcuminoids by density functional theory"
    Masoumeh Ighaei Bonab, Jaber Jahanbin Sardroodi, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    Journal of the Iranian Chemical Society, Vol. 14, No 2, pp.357-364, 2017
40. "The antiangiogenic and antitumor activities of the N-terminal fragment of endostatin augmented by Ile/Arg substitution: The overall structure implicated the biological activity"
    Reyhane Chamani, Mohsen Asghari, Ali Mohammad Alizadeh, Kamran Mansouri, Taher Doroudi, Peir Hossein Kolivand, Hossein Ghafouri, Somayeh Ehteshame, Hanieh Rabouti, Faramarz Mehrnejad
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, Vol. 1864, No 12, pp.1765-1774, 2016
41. "Molecular Insight into Human Lysozyme and Its Ability to Form Amyloid Fibrils in High Concentrations of Sodium Dodecyl Sulfate: A View from Molecular Dynamics Simulations"
    Jafari Majid, Faramarz Mehrnejad
    PLoS One, Vol. 11, No 10, 2016
42. "Antimicrobial Peptides (AMPs)"
    Mehrzad Sadredinamin, Faramarz Mehrnejad, Peyman Hosseini, Farahnoosh Doustdar
    Novelty in Biomedicine, Vol. 4, No 2, pp.70-76, 2016
43. "Synthesis, Radiolabeling, and Biological Evaluation of Peptide LIKKPF Functionalized with HYNIC as Apoptosis Imaging Agent"
    Sepideh Khoshbakht, Davood Beiki, Parham Geramifar, Farzad Kobarfard, Omid Sabzevari, Mohsen Amini, Faramarz Mehrnejad, Soraya Shahhosseini
    Iranian Journal of Pharmaceutical Research, Vol. 15, No 2, pp.415-424, 2016
44. "Effect of sorbitol and glycerol on the stability of trypsin and difference between their stabilization effects in the various solvents"
    Mohammad Pazhang, Faramarz Mehrnejad, Yagoob Pazhang, Hanieh Falahati, Nader Chaparzadeh
    BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY, Vol. 63, No 2, pp.206-213, 2016
45. "An in silico approach to investigate the source of the controversial interpretations about the phenotypic results of the human AhR-gene G1661A polymorphism"
    Younes Aftabi, Abasalt Hosseinzadeh Colagar, Faramarz Mehrnejad
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 393, No 21, pp.1-15, 2016
46. "HYNIC a bifunctional prosthetic group for the labelling of peptides with 99mTc and 18FDG"
    Sepideh Khoshbakht, Farzad Kobarfard, Davood Beiki, Omid Sabzevari, Mohsen Amini, Faramarz Mehrnejad, Kimia Tabib, Soraya Shahhosseini
    JOURNAL OF RADIOANALYTICAL AND NUCLEAR CHEMISTRY, Vol. 307, No 2, pp.1125-1134, 2016
47. "Molecular Interactions in the Systems Composed of Curcumin, Water and Single-Walled Carbon Nanotube: A Molecular Dynamics Simulation Study"
    Masoumeh Ighaei Bonab, Jaber Jahhanbin Sardroodi, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    Journal of Computational and Theoretical Nanoscience, Vol. 12, No 9, pp.2077-2083, 2015
48. "Biochemical Characterization and Computational Identification of Mycobacterium tuberculosis Pyrazinamidase in Some Pyrazinamide-Resistant Isolates of Iran"
    Farahnoosh Doustdar , Mohammad Pazhang, Faramarz Mehrnejad, Mehrnoosh Safarzadeh, Davod Rabiei, Nader Chaparzadeh, Hanieh Falahati, Mohammad Mir-derikvand
    PROTEIN JOURNAL, Vol. 34, No 3, pp.181-192, 2015
49. "Salinity Tolerance Ranking Of Various Wheat Landraces From The West Of The Urmia Saline Lake In Iran By Using Physiological Parameters"
    Nader Chaparzadeh, Younes Aftabi, Meysam Dolati, Faramarz Mehrnejad, Mohammad Pessarakli
    JOURNAL OF PLANT NUTRITION, Vol. 37, No 7, pp.1025-1039, 2014
50. "Oxidative markers in five Iranian alfalfa (Medicago sativa L.) cultivars under salinity stress"
    Nader Chaparzadeh, Faramarz Mehrnejad
    Iranian Journal of Plant Physiology, Vol. 3, No 4, 2013
51. "Interaction of Piscidin-1 with zwitterionic versus anionic membranes: a comparative molecular dynamics study"
    Arezo Rahmanpour, Mohamad Mehdi Ghahremanpour, Faramarz Mehrnejad, Majid Erfani Moghadam
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 31, No 12, pp.1393-1403, 2012
52. "Genetic fingerprinting and antimicrobial susceptibility profiles of Pseudomonas aeruginosa isolates from eye infections"
    Hossein Goudarzi , Fatemeh Karimi , Fahimeh Asadi Amoli , Zohreh Abedinyfar , Farahnoosh Doustdar , Faramarz Mehrnejad
    IRANIAN JOURNAL OF CLINICAL INFECTIOUS DISEASES, Vol. 6, No 1, pp.41-46, 2011
53. "Mechanisms of amphipathic helical peptide denaturation by guanidinium chloride and urea: a molecular dynamics simulation study"
    Faramarz Mehrnejad, Mahmoud Khadem-maaref, Mohammad Mehdi Ghahremanpour, Farahnoosh Doustdar
    Journal of Computer-Aided Molecular Design, Vol. 24, No 10, pp.829-841, 2010
54. "Molecular dynamics simulation study of the interaction of Piscidin 1 with DPPC bilayers: structure-activity relationship."
    Faramarz Mehrnejad, Mahboubeh Zarei
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 27, No 4, pp.551-560, 2010
55. "Structural studies of SNARE complex and its interaction with complexin by molecular dynamics simulation"
    Faramarz Mehrnejad, Mohammad Mehdi Ghahremanpour, Majid Erfani Moghadam
    BIOPOLYMERS, Vol. 93, No 6, pp.560-570, 2010
56. "Structural and dynamical studies of Humanin in water and TFE/water mixture: a molecular dynamics simulation."
    Faramarz Mehrnejad, Nader Chaparzadeh
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 26, No 2, pp.255-262, 2008
57. "PCR-based Gene Synthesis, Molecular Cloning, High Level Expression, Purification, and Characterization of Novel Antimicrobial Peptide, Brevinin-2R, in Escherichia Coli"
    Faramarz Mehrnejad, Hossein Naderi-manesh, Bijan Ranjbar, Bahman Maroufi, Ahmad Asoodeh, Farahnoosh Doustdar
    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, Vol. 149, No 2, pp.109-118, 2007
58. "The structural properties of magainin in water, TFE/water, and aqueous urea solutions: molecular dynamics simulations."
    Faramarz Mehrnejad, Hossein Naderi-manesh, Bijan Ranjbar
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No 4, pp.931-940, 2007
59. "Study of Structure and Dynamics of L-Asparaginase in the Presence of Poly (Lactic Acid) using Molecular Dynamics Simulation"
    سما الزوینی, Faramarz Mehrnejad, یاسمن محمودی, Ali Hossein Rezayan, Mohammad Barshan Tashnizi
    iranian journal of bioligy, Vol. -, 2022
60. "Investigation the UV Effect on Uranium Bioleaching Process in Acidithiobacillus sp FJ2 and its Possible Consequences on the CoxB Gene Sequence"
    رقیه جعفرپور, Faezeh Fatemi, Faramarz Mehrnejad, اکرم عیدی
    Biology of Microorganisms, Vol. 3, No 27, pp.95-111, 2018
61. "Interaction of Antimicrobial Peptide Pardaxin with DPPC ‎Bilayers by Molecular Dynamics Simulation"
    Farahnoosh Doustdar, Raheleh Aghdami, Faramarz Mehrnejad, نادر چاپارزاده
    Modares Journal of Biotechnology, Vol. 9, No 1, 2017
62. "The effect of calcium on the activation of thermolysin by salt"
    Abdoali Varasteh, S. Mohsen Asghar Asghari, مجید تقدیر , Mahmudreza Aghamali, Mohammad Pazhang, Faramarz Mehrnejad
    Journal of Cell and Molecular Research, Vol. 30, No 1, pp.44-58, 2017
63. "Effect of metal ions on the activity and stability of wild type and mutant pyrazinamidases"
    Mehrnoosh Safarzadeh, محمد پاژنگ , Faramarz Mehrnejad, Farahnoosh Doustdar, نادر چاپارزاده , Davod Rabiei
    Biology of Microorganisms, Vol. 5, No 18, pp.169-182, 2016
64. "Cloning and Production of Recombinant Human Granzyme M Enzyme"
    Nrjes Khazeh, Mohammad Pazhang, Faramarz Mehrnejad, Nader Chaparzadeh
    Journal Of Zanjan University Of Medical Sciences And Health Services, Vol. 23, No 100, pp.53-64, 2015
65. "The Study of mutations effect on the inactivation of pyrazinamidase by molecular dynamics simulations"
    Mehrnoosh Safarzadeh, Mohammad Pazhang, Faramarz Mehrnejad, Farahnoosh Doustdar, Nader Chaparzadeh, Davod Rabiei, Alireza Mohammadpour
    iranian journal of bioligy, Vol. 28, No 2, pp.266-278, 2015
66. "In vitro Evaluation of antibacterial efficacy of aqueous extracts of Iranian Native Plants on the Standard Strains of Pseudomonas aeruginosa"
    Saleh Jamehdor, Mahdi Zarabi, Faramarz Mehrnejad, Vahid Yavarpour Kordestani
    Iranian Journal of Medical Microbiology, Vol. 2, No 1393, 2014
67. "Type III secretion system characterization of Pseudomonas aeruginosa isolates associated with cystic fibrosis"
    Robab Azargun, Farahnoosh Doustdar, Ghamartaj Khanbabaei, Mona Ghazi, Faramarz Mehrnejad, Hossein Goudarzi
    Research in Medicine, Vol. 37, No 3, 2013
68. "Effect of Organic Solvents on the Activity and Stability of Trypsin and Its Stabilization by Sucrose"
    Mohammad Pazhang, Faramarz Mehrnejad, Nader Chaparzadeh, Arezo Rahmanpour
    Modares Journal of Biotechnology, Vol. 4, No 1, 2013
69. "Structural-functional studies of peptides derived from a long-chain snake neurotoxin Naja naja oxiana"
    Adak Nasiripourdori, Bijan Ranjbar, Hossein Naderi-manesh, Faramarz Mehrnejad, صفیه صوفیان , Goudarz Sadeghi Hashjin, سعید کلاهیان
    Physiology and Pharmacology, Vol. 12, No 3, 2008

Conference Paper

1. "Unraveling Protein Dynamics in the Presence of Cellulose Nanocrystals: An Essential Dynamics Analysis"
   Emami Hamed, Masoud Shahriari, Yasaman Mahmoodi, Faramarz Mehrnejad
   The 12th National Conference and the 3rd International Bioinformatics Conference, 2024
2. "Demonstration of cellular dynamic behavior in response to DNA damage through gene regulatory network analysis of single-cell resolution DNA repair phenotype and gene expression multi-omics dataset"
   Abolfazl Arab, Sama Goliaei, Faramarz Mehrnejad
   The first international conference and the tenth national bioinformatics conference of Iran, 2022
3. "Structure, Dynamics, and Bilayers Perturbing Potency of Antimicrobial Peptides into the Different Membranes: A Molecular Dynamics Simulation Study"
   Faramarz Mehrnejad
   The 1st International and 3rd National Conference on Biomathematics, 2022
4. "The Protein Encapsulation in the Modified Chitosan Self-Aggregated Nanoparticles"
   Faramarz Mehrnejad, Somayeh Khanmohammadi
   21th National & 9th International Congress on Biology, 2021
5. "Study of Antimicrobial Peptides Encapsulation into the Polymeric and Phospholipid Nanoparticles using Molecular Dynamics Simulation"
   Faramarz Mehrnejad
   The Second International Conference on Applications of Advanced Technologies: Biological Sciences (ICAAT2), 2021
6. "Acetylation of lysin and N termini residues of human insulin: study on structural alterations"
   Reyhane Kamelnia, Bahram Golyaei, Azadeh Ebrahim-Habibi, Faramarz Mehrnejad
   The 4th International Congress on BioMedicine, 2020
7. "Molecular Dynamics Studies of Truncated Human Cathelicidin LL:37 Peptide Interacting with a Bacterial Model Membrane"
   Samira Jahangiri, Majid Jafari, Faramarz Mehrnejad
   Iranian Conference on Bioinformatic, 2018
8. "Encapsulation of Antiangiogenic Peptide in Nanoliposomes for Controlled Release"
   Nastaran Rezaei, Zahra Vaezi, Faramarz Mehrnejad, S Mohsen Asghari, Hossein Naderi-Manesh
   Second Nanomedicine and Nanosafety Conference (NMNS 2017), 2017
9. "Effects of sorbitol and glycerol on the structure, dynamics, and stability of Mycobacterium tuberculosis pyrazinamidase."
   Mohadeseh Khajehzadeh, Faramarz Mehrnejad, Mohammad Pazhang, Farahnoosh Doustdar
   2nd Asian African Congress of Mycobacteriology, 2017
10. "Spectroscopic studies on the interaction of bovine serum albumin with NMBPS (Nano Magneto Bio Polymer System) nanoparticle"
    Masomeh Taran, Ghassem Amoabediny, Faramarz Mehrnejad, Faezeh Kashanian
    5th International Congress on Nanoscience & Nanotechnology (ICNN2014), 2014
11. "Cloning and Expression of GranzymeM cDNA"
    Narges Khazeh, Mohammad Pazhang, Faramarz Mehrnejad, Nader Chaparzadeh
    First International and 13th Iranian Genetics Congress, 2014
12. "Study of Anticancer Peptide Interacting with Model Membranes: Molecular Dynamics Simulation"
    Raheleh Aghdami, Faramarz Mehrnejad, Nader Chaparzadeh, Ali Reza Rastkar Ebrahimzadeh
    First International and 13th Iranian Genetics Congress, 2014
13. "High Level Expression and Purification of PZase and Study of Osmolyte Effects on its Activity"
    Mohadeseh Khahjezadeh, Mohammad Pazhang, Nader Chaparzadeh, Farahnoosh Doustdar, Mehrnoosh Safarzadeh, Faramarz Mehrnejad
    First International and 13th Iranian Genetics Congress, 2014
14. "Prediction of Bovine Carbonic Anhydrase II binding sites by computational solvent mapping"
    Elham Morad, Bahram Golyaei, Faramarz Mehrnejad, Ali Akbar Saboury
    ICB 2014 : 5th Iran Conference on Bioinformatics, 2014
15. "Molecular Dynamics Simulation Studies on stabilizers used in immunoglobulin products"
    Masoumeh Ali Mohammadi, Faramarz Mehrnejad, Mahmood Khadem-maaref, Nader Chaparzadeh
    12th International Congress of Immunology & Allergy of Iran Milad Tower-Tehran-Iran, 2014
16. "None Viral Gene Delivery in Renal Epithelial Cells Using PEI-oligocation Conjugates"
    F. Oroojalian, Ali Hossein Rezayan, Kh. Abnous, Faramarz Mehrnejad, H. Parhiz, M. Ramezani
    The 1 st middle east & the 6th Iranian Controlled Release Conference 2014, 2014
17. "Analysis of Quorum sensing related genes in virulence of different genotypes of Pseudomonas aeroginosa isolated from keratitis and conjunctivities."
    Farahnoosh Doustdar, Faramarz Mehrnejad, Zohreh Abedinyfar, Fahimeh Asadi Amoli, Fatemeh Karimi, Robab Azargun, Hossein Goudarzi
    14th International Iranian Congress of Microbiology, 2013
18. "Effects of osmolytes on the Protein stability: Molecular dynamics simulation"
    Masumeh Alimohammadi, Faramarz Mehrnejad, Mahmoud Khadem Maaref, Nader Chaparzadeh
    1st Tabriz International Life Science Conference and 12thIran Biophysical Chemistry Conference (TILSC & IBCC), 2013, Tabriz, Iran, 2013
19. "The Study of Hydrogen Bonds Between Curcuminoids and C1B Subdomain of Protein Kinase C By Docking Method"
    Jaber Jahanbin, Faramarz Mehrnejad, Masoomeh Eghaeei, Alireza Rastkar Ebrahimzadeh
    1st Tabriz International Life Science Conference and 12thIran Biophysical Chemistry Conference (TILSC & IBCC), 2013, Tabriz, Iran, 2013
20. "A Computational Analysis of Interactions of Curcuminoids with Human Serum Albumin"
    Masoomeh Eghaeei, Jaber Jahanbin, Alireza Rastkar Ebrahimzadeh, Faramarz Mehrnejad
    The First International & 11th Iran Biophysical Chemistry Conference 13-15 June 2012 Ardabil University of Medical Sciences, Ardabil, Iran, 2012
21. "Study of the Structure-Activity Relationship of Pyraziamidase Using Molecular Docking and Molecular Dynamics Simulations"
    Davod Rabiei, Faramarz Mehrnejad, Mohammad Pazhang, Mehrnoosh Safarzadeh, Nader Chaparzadeh, Farahnoosh Doustdar, Mahmoud Khadem Maaref, Mohammad Hosseini
    The First International 11th Iran Biophysical Chemistry Conference, 2012
22. "Study of Interactions Between Antimicrobial Peptide LAH4 and Model Membranes"
    Matin Islami, Faramarz Mehrnejad, Majid Taghdir, Mahmoud Khadem Maaref
    The First International 11th Iran Biophysical Chemistry Conference, 2012
23. "Molecular Cloning Overexpression and Biochemical Characterization of Pyrazinamidase from M. Tuberculosis"
    Mehrnoosh Safarzadeh, Faramarz Mehrnejad, Mohammad Pazhang, Davod Rabiei, Nader Chaparzadeh, Farahnoosh Doustdar, Mohammad Hosseini
    The First International 11th Iran Biophysical Chemistry Conference, 2012
24. "Design and Synthesis of Amphiphilically Modified Chitosan Nanoparticles for Delivery of Therapeutic Proteins"
    شیرین شاه آبادی, Faramarz Mehrnejad
    23rd National and 11th International Iranian Biology Congress, 2024
25. "Investigating the Dynamics and Structure of Therapeutic Proteins in Nanoparticle Drug Delivery Formulations"
    Faramarz Mehrnejad
    23rd National and 11th International Iranian Biology Congress, 2024
26. "The impact of pH variations on the structure and dynamics of insulin: An all-atom molecular dynamics simulation study"
    شیرین جلالی, حامد امامی, شیرین شاه آبادی, Faramarz Mehrnejad
    Iran's 5th Conference on Protein and Peptide Science, 2024
27. "Design and Study of Polymeric Nanosystems in order to Encapsulate Therapeutics Proteins"
    Faramarz Mehrnejad
    6th National Seminar on Polymer, 2021
28. "Study of Structure and Dynamics of Protein in the presence of Co-solvent Using Molecular Dynamics Simulation"
    Faramarz Mehrnejad
    The 88th National Congress on Biology and Natural Sciences of Iran, 2021
29. "Effect of Gold Nanoparticles on Acetylcholinesterase"
    Hananeh Akbarnejad, Hossein Rahmani, Faramarz Mehrnejad, Reza H. Sajedi, محمد قدمیاری , Mohammad Barshan Tashnizi
    5th Iranian Congress of Trace Elements, 2016
30. "Role of Metal Ions in the Function of Pyrazinamidase using Quantum Mechanics Calculations"
    محمود خادم معارف , Faramarz Mehrnejad, Arash Phirouznia
    5th Iranian Congress of Trace Elements, 2016
31. "Molecular dynamics simulation of metalloproteins"
    Faramarz Mehrnejad
    5th Iranian Congress of Trace Elements, 2016
32. "Study of HLAG-LILRB1&B2 Interactions"
    Maede Sedghiyan, پرویز عبدالمالکی , Faramarz Mehrnejad
    nternational Scientific Conference on Engineering and Applied Sciences, 2016
33. "Single Wall Carbon Nanotubes"
    معصومه ایقایی , جابر جهان بین , Faramarz Mehrnejad, Alireza Rastkar Ebrahimzadeh
    2nd National Conference of Nanotechnology from Theory Application, 2014
34. "Investigation of effect of Carbon nanotube on solubility of different isomers of curcumin by Molecular Dynamic Simulation"
    Jaber Jahanbin, Faramarz Mehrnejad, Masoomeh Eghaeei, Alireza Rastkar Ebrahimzadeh, Sadegh Afshari
    Nanocomputation, 2013